Supplemental table for cell line data
A complete list of all 1,250 cell lines available in the platform
Table of JetSet best probe sets
JetSet best probe sets
Teaching materials
ROC analysis applied methods
Related publications
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Kovacs SA, Fekete JT, Gyorffy B: Predictive biomarkers of immunotherapy response with pharmacological applications in solid tumors, Acta Pharmacol Sin., 2023 Sep;44(9):1879-1889. doi: 10.1038/s41401-023-01079-6.
Janos Fekete, Balazs Gyorffy: New transcriptomic biomarkers of 5-fluorourail resistance, Int J Mol Sci., 2023 Jan 12;24(2):1508, doi: 10.3390/ijms24021508.
Janos Fekete, Balazs Gyorffy: A unified platform enabling biomarker ranking and validation for 1562 drugs using transcriptomic data of 1250 cancer cell lines, Computational and Structural Biotechnology Journal, 2022, 20:2885-2894, doi: 10.1016/j.csbj.2022.06.007.
Fekete J.T., Ősz Á., Pete I., Nagy G.R., Vereczkey I. and Győrffy B. Predictive biomarkers of platinum and taxane resistance using the transcriptomic data of 1816 ovarian cancer patients. Gynecol Oncol, 2020 Jan 20. doi:10.1016/j-ygno.2020.01.006.
Menyhárt O, Fekete, J. T. and Gyorffy B. Gene expression indicates altered immune modulation and signaling pathway activation in ovarian cancer patients resistant to topotecan. Int J Mol Sci, 2019 Jun 5;20(11). pii:E2750. doi:10.3390/ijms.20112750
Fekete, J. T. and B. Gyorffy . ROCplot.org: Validating predictive biomarkers of chemotherapy/hormonal therapy/anti-HER2 therapy using transcriptomic data of 3,104 breast cancer patients. Int J Cancer, 2019 Apr 24. doi:10.1002/ijc.32369
Menyhárt O, Harami-Papp H, Sukumar S, Schäfer R, Magnani L, de Barrios O, Győrffy B. Guidelines for the selection of functional assays to evaluate the hallmarks of cancer. Biochim Biophys Acta. 2016 Dec;1866(2):300-319. doi: 10.1016/j.bbcan.2016.10.002.
Győrffy B, Hatzis C, Sanft T, Hofstatter E, Aktas B, Pusztai L. Multigene prognostic tests in breast cancer: past, present, future. Breast Cancer Res. 2015 Jan 27;17:11. doi: 10.1186/s13058-015-0514-2.
Li Q, Birkbak NJ, Gyorffy B, Szallasi Z, Eklund AC. Jetset: selecting the optimal microarray probe set to represent a gene. BMC Bioinformatics. 2011 Dec 15;12:474. doi: 10.1186/1471-2105-12-474.